Changelog • metacheck

metacheck 0.0.0.9065

New github_links() function to find github references in a paper.
code_check module very much improved - checks SAS and STATA code in OSF, researchbox, and github repos.
power module much improved
New modules: coi_check, funding_check
New functions extract_p_values() and extract_urls(), so now no need to use all_p_values and all_urls modules to geth their tables. These modules remain because they are used in demos, but may be deprecataed soon.

Enhanced module help
“ref_replication” module no longer warns about replications if you have cited them.
Extensive chenges to clen up tests.

get_doi() has been removed in favour of crossref_query(), to look up crossref info by bibliographic query, and crossref_doi(), to look up crossref info by DOI.
scroll_table() changed arguments. height is removed and scroll_above changed to maxrows. It not paginates above maxrows (default = 2), rather than scrolling within a fixed height. This is a more accessible solution, since scrolling is hard with touchscreens and it’s often hard to copy text in a scroll window. We will continually improve this with further user feedback.
Fixed a bunch of small problems with modules and let the report render even with errors
Updated the report template with light and dark themes (set to user preference)
The module reference_check is split into ref_doi_check and ref_accuracy.
Lots of modules got renamed so they have a consistent format.

json_expand() updated to handle LLM JSON errors more gracefully.
You can pass arguments to modules via report() now with the new args argument.
New get_prev_outputs() module helper function
Updated the vignettes.
Modules aspredicted and retractionwatch are removed, as they are superseded by prereg_check and reference_check.
The module nonsignificant_pvalue has changed to nonsig_p
The default modules in a report have changed.
A new module report helper, format_ref() for displaying references in bibentry or bibtex formats
The ref column of the bib table in paper objects is now the bibentry for a reference, not just the formatted text. This will allow for more formatting options.

Efficiency improvements to the OSF functions
Fixed some confusing parts of the articles that changed when the module output report structure changed.
Modules are now categorised by section: general, intro, method, results, discussion, reference
Reports are organised by section
Display improvement in reports
Module report improvement (e.g., fixing broken links)
New example report on the pkgdown website

Lots of changes for how reports are formatted
In module output, summary is now summary_table
Fixed a bug where some .docx file wouldn’t read in (support for Word files is still patchy – ideally render to PDF)
New pubpeer_comments() function (now vectorised)
Module helpers: scroll_table(), collapse_section(), link(), plural(), pb()

Package name changed to metacheck!
Fixed a bug in osf_file_download() when multiple files have the same name and ignore_folder_structure = TRUE.
osf_file_download() should handle errors more gracefully (with warnings, but not fail)