FReD replication database and associated functions now renamed to FLoRA()
Various bug fixes discovered when running modules on large numbers of papers (e.g., handling when zero references have DOIs)
Modules “function_check” and “coi_check” reverted to the rtransparent versions (the re-written version were overinclusive and need more development).
metacheck 0.0.0.9067
reports() now takes a paperlist and makes a report from each
New report_module_run() and report_qmd() break down the report() function to allow separation of module output lists and creation of QMD report from them (might be changed to internal functions).
Module “ref_accuracy” now returns info for references with missing DOIs that were found by ref_doi_check
Module “code_check” split into “repo_check” and “code_check”
metacheck 0.0.0.9066
lmm() allows you to set the model to any provider or provider/model supported by ellmer (must have appropriate *****_API_KEY set in your Renviron)
lmm() arguments have changed to align with ellmer::chat() arguments
lmm_models() now returns models from all platforms for which you have a valid API key set
The power module uses a new prompt that utilises a JSON schema for power
Updated report styles
metacheck 0.0.0.9065
New github_links() function to find github references in a paper.
code_check module very much improved - checks SAS and STATA code in OSF, researchbox, and github repos.
power module much improved
New modules: coi_check, funding_check
New functions extract_p_values() and extract_urls(), so now no need to use all_p_values and all_urls modules to get their tables. These modules remain because they are used in demos, but may be deprecated soon.
metacheck 0.0.0.9064
Enhanced module help
“ref_replication” module no longer warns about replications if you have cited them.
Extensive chenges to clen up tests.
metacheck 0.0.0.9063
get_doi() has been removed in favour of crossref_query(), to look up crossref info by bibliographic query, and crossref_doi(), to look up crossref info by DOI.
scroll_table() changed arguments. height is removed and scroll_above changed to maxrows. It not paginates above maxrows (default = 2), rather than scrolling within a fixed height. This is a more accessible solution, since scrolling is hard with touchscreens and it’s often hard to copy text in a scroll window. We will continually improve this with further user feedback.
Fixed a bunch of small problems with modules and let the report render even with errors
Updated the report template with light and dark themes (set to user preference)
The module reference_check is split into ref_doi_check and ref_accuracy.
Lots of modules got renamed so they have a consistent format.
metacheck 0.0.0.9062
json_expand() updated to handle LLM JSON errors more gracefully.
You can pass arguments to modules via report() now with the new args argument.
Modules aspredicted and retractionwatch are removed, as they are superseded by prereg_check and reference_check.
The module nonsignificant_pvalue has changed to nonsig_p
The default modules in a report have changed.
A new module report helper, format_ref() for displaying references in bibentry or bibtex formats
The ref column of the bib table in paper objects is now the bibentry for a reference, not just the formatted text. This will allow for more formatting options.
metacheck 0.0.0.9061
Efficiency improvements to the OSF functions
Fixed some confusing parts of the articles that changed when the module output report structure changed.
Modules are now categorised by section: general, intro, method, results, discussion, reference
