Package index • metacheck

Reading in Papers

report_app(): Launch Report App
convert(): Convert documents
convert_bibr(): Convert documents using bibr
convert_grobid(): Convert a PDF to Grobid XML
grobid_to_bibr(): Convert Grobid TEI XML file to bibr format
read(): Read in grobid XML or bibr JSON
demopaper(): Get demo paper
demofile(): Get a demo file
test_paper(): Test paper
paper_id(): Get Paper IDs
paper_write(): Write paper
paper_validate(): Validate a Paper Object

Paper Database Corpora

papers_available(): List available paper corpora
papers_load(): Load a paper corpus
papers_remove(): Remove a cached paper corpus
papers_metadata(): Get a paper corpus's Dublin Core metadata

Search Papers

text_search() search_text(): Search text
text_expand() expand_text(): Expand text
paper_table(): Paper tables
ref_table(): Reference and DOI table

Module Functions

module_list(): List modules
module_help(): Get Module Help
module_info(): Get module information
module_run(): Run a module
module_report(): Report from module output
module_template(): Create a Module from a Template
module_install(): Install modules from GitHub
module_update(): Update installed modules
module_remove(): Remove installed modules
module_installed(): List installed module repositories
report(): Create a Report
report_module_run(): Run modules for a report
report_qmd(): Create Report from Module Output
FAIR_repo(): Convert a research folder into a clean, FAIR copy
report_type(): Set or get the report type
report_repository(): Create a Report for a Local Repository

Module Helpers

These functions help module writers make consistently formatted report text.

scroll_table(): Make Scroll Table
report_table(): Display a Table in a Report
collapse_section(): Make Collapsible Section
plural(): Pluralise
link(): Make an html link
logger(): Log messages
lastlog(): Get the last log
format_ref(): Format Reference
get_prev_outputs(): Get Previous Outputs
format_bib_authors(): Format Bib Authors
fig_image_view(): View a figure image

Code Check Helpers

These functions help repo_check and code_check modules to assess code files.

code_abs_path(): Return Absolute Paths
code_extract_r(): Convert Rmd/qmd files to R code only
code_file_refs(): Get files referenced in code
code_lang(): Detect Code Language
code_library_lines(): Get Code Library Lines
code_line_stats(): Get Code Composition Stats
code_parse_r(): Parse code to check for errors
code_read(): Read code from files
code_remove_comments(): Remove comments from code text
code_extract_py(): Convert a Jupyter notebook to code only
code_extract_qmd_py(): Extract Python chunks from a Quarto document
code_install_packages(): Find install.packages() calls in code
code_library_names(): Get package names loaded in code
code_packages(): Distinct packages from a code_check table
code_setwd(): Find setwd() calls in code

LLM Functions

llm(): Query an LLM
llm_max_calls(): Set the maximum number of calls to the LLM
llm_model(): Set the default LLM model
llm_model_list(): List LLM Models
llm_use(): Set or get metacheck LLM use
json_expand(): Expand a JSON column
llm_cache(): Turn the lasting LLM response cache on or off, or query it
llm_cache_clear(): Clear the on-disk LLM response cache
llm_max_tokens(): Set the default max_tokens for LLM calls
llm_reasoning(): Set the default reasoning effort for LLM calls
llm_timeout(): Set the per-call timeout for LLM requests

References/Citations

add_bib_match(): Match table from bib table
crossref_doi(): CrossRef Info from DOI
crossref_query(): Look up Reference in CrossRef
datacite_doi(): Doi.org Info from DataCite
doi_clean(): Clean DOIs
doi_lookup(): Doi.org Info from DOI
doi_valid_format(): Validate DOI format
doi_resolves(): Check whether a DOI resolves
FLoRA(): FORRT Replication Database (FLoRA)
FLoRA_update(): Update FLoRA
FLoRA_date(): Get date FLoRA was updated
openalex_doi(): OpenAlex info from DOI
openalex_query(): Look up a reference in OpenAlex
pubpeer_comments(): Get Pubpeer Comments
retractionwatch() rw(): RetractionWatch data
rw_date(): Get date retractionwatch was updated
rw_update(): Update retractionwatch

OSF Functions

osf_links(): Find OSF Links in Papers
osf_info(): Retrieve info from the OSF by ID
osf_file_download(): Download all OSF Project Files
osf_api_check(): Check OSF API Server Status
osf_check_id(): Check OSF IDs
osf_delay(): Set the OSF delay
osf_get_all_pages(): Get All OSF API Query Pages
osf_preprint_list(): Get A list of preprints from the OSF
osf_type(): Get OSF GUID Type
osf_app(): Launch OSF Download App
osf_user_projects(): List the Projects Belonging to an OSF User

GitHub Functions

github_links(): Find GitHub Links in Papers
github_repo(): Get Short GitHub Repo Name
github_info(): Get GitHub Repo Info
github_files(): Get File List from GitHub
github_readme(): Get README from GitHub
github_languages(): Get Languages from GitHub Repo

Archive Functions

local_files(): List Local Files
aspredicted_links(): Find AsPredicted Links in Papers
aspredicted_info(): Retrieve info from AsPredicted by URL
rbox_links(): Find ResearchBox Links in Papers
rbox_info(): Retrieve info from ResearchBox by URL
rbox_file_download(): Retrieve files from ResearchBox by URL
rbox_files(): List the Files in a ResearchBox
rbox_search(): Search ResearchBox
rbox_token(): Get or Set the ResearchBox API Key
zenodo_links(): Find Zenodo Links in Papers
zenodo_info(): Retrieve info from Zenodo by URL
zenodo_file_download(): Download all Zenodo Project Files
dataverse_links(): Find Dataverse Links in Papers
dataverse_info(): Retrieve info from Dataverse by URL
dataverse_file_download(): Download all files from a Dataverse dataset
dataverse_pat(): Set or get a Dataverse API token
figshare_links(): Find Figshare Links in Papers
figshare_info(): Retrieve info from Figshare by URL
figshare_file_download(): Download all files from a Figshare article
figshare_pat(): Set or get a Figshare API token
dryad_links(): Find Dryad Links in Papers
dryad_info(): Retrieve info from Dryad by URL
dryad_file_download(): Download all files from a Dryad dataset
dryad_pat(): Set or get a Dryad API token
reshare_links(): Find ReShare Links in Papers
reshare_info(): Retrieve info from ReShare by URL
reshare_file_download(): Download all files from a ReShare deposit
researchdata4tu_links(): Find 4TU.ResearchData Links in Papers
researchdata4tu_info(): Retrieve info from 4TU.ResearchData by URL
researchdata4tu_file_download(): Download all files from a 4TU.ResearchData article
researchdata4tu_pat(): Set or get a 4TU.ResearchData API token
ldbase_links(): Find LDbase links in a paper
ldbase_info(): Get the files of LDbase projects, datasets, code and documents
dataone_links(): Find DataONE Links in Papers
dataone_info(): Retrieve info from DataONE by URL
dspace_links(): Find DSpace (legacy REST API) Links in Papers
dspace7_links(): Find DSpace 7+ Links in Papers
dspace7_file_download(): Retrieve public file list from a DSpace 7+ installation by URL
fsd_links(): Find FSD Links in Papers
fsd_info(): Retrieve info from FSD by URL
mendeley_links(): Find Mendeley Data Links in Papers
mendeley_info(): Retrieve info from Mendeley Data by URL
psycharchives_links(): Find PsychArchives Links in Papers
psycharchives_info(): Retrieve info from PsychArchives by URL
psycharchives_file_download(): Retrieve public file list from PsychArchives by URL
gitlab_links(): Find GitLab Links in Papers
gitlab_repo(): Get Short GitLab Project Path
dryad_auth(): Set or get Dryad OAuth2 client credentials
zenodo_upload(): Upload Folders to Zenodo

API Keys

api_key_status(): Check the API keys metacheck uses
api_keys_use(): Use your own API keys
github_pat(): Set or get a GitHub token
osf_pat(): Set or get the OSF personal access token
gitlab_pat(): Set or get a GitLab API token
openalex_key(): Set or get an OpenAlex API key
zenodo_pat(): Set or get the Zenodo personal access token

Integrations

email(): Set or get email
filetype(): Get file Type from Extension
file_category(): Categorise files
causal_relations(): Extract causal relations from sentence(s) via a Hugging Face Space
regcheck_compare(): Compare a Preregistration with a Paper via RegCheck
regcheck_setup_local(): Set up the local RegCheck server (manual Python path)
regcheck_start_local(): Start the local RegCheck server
regcheck_stop_local(): Stop the local RegCheck server

Validation Functions

validate(): Validate a module's output against coded ground truth
accuracy(): Accuracy

Extras

extract_eq(): Extract Equations
extract_p_values(): Extract P-Values
extract_urls(): Extract URLs
path_sanitize(): Sanitize File Path
stats(): Check Stats
emojis: Emojis
pb(): Progress Bar
verbose(): Set or get verbosity

Reproducibility Check

repro_dependencies(): Collect the package dependencies a set of code files declare
repro_dependencies_py(): Collect the package dependencies a set of Python files declare
repro_defined_vars(): Find the variables each script defines at top level
repro_file_io(): Extract the files a script reads, writes, and sources
repro_missing_inputs(): Diagnose why a referenced input file is unavailable
repro_run_order(): Determine the order code files must run in
repro_rewrite_paths(): Rewrite a code file's data-file paths to the Psych-DS layout
repro_materialize_layout(): Copy a paper's files into a throwaway directory, as a plan places them
repro_write_scripts(): Write path-rewritten scripts into the materialised layout
repro_docker_available(): Is Docker available and running?
repro_install_deps(): Install a paper's declared dependencies into a throwaway library
repro_install_deps_docker(): Install R dependencies inside a throwaway Docker container
repro_install_deps_py(): Install a paper's declared Python dependencies into a throwaway environment
repro_install_deps_py_docker(): Install Python dependencies inside a throwaway Docker container
repro_run_scripts(): Run the paper's scripts, in order, in isolated subprocesses
repro_run_scripts_docker(): Run the paper's scripts, in order, each in an isolated Docker container
repro_run_scripts_py(): Run Python scripts, in order, each in an isolated subprocess
repro_run_scripts_py_docker(): Run Python scripts, in order, each in an isolated Docker container

Data Check Helpers

data_check_case_issues(): Flag categorical levels that differ only by letter case
data_check_colname(): Flag a problematic column name
data_check_constant(): Flag a constant or near-constant column
data_check_demographic(): Detect whether a column holds participant age, gender/sex, or race/ethnicity
data_check_empty(): Flag a column with no observed values
data_check_numeric_in_text(): Flag a mostly-numeric column stored as text
data_check_scale_values(): Flag values that fall outside a rating scale's valid range
data_check_spss_filter(): Flag an SPSS "Select Cases" filter variable
data_classify_files(): Classify repository files into data_check semantic types
data_col_facets(): Describe a data column as orthogonal facets (DDI-style)
data_format(): Classify a data file as tabular or raw
manifest_merge(): Merge fields into a metacheck manifest, preserving other sections

Statistical Output

import_jasp(): Read a JASP (.jasp) file
import_mplus_output(): Read an Mplus (.out) output file
import_omv(): Read a jamovi (.omv) file
import_spv(): Read the statistical result tables from an SPSS Viewer (.spv) file
import_stata_smcl(): Read a Stata Markup and Control Language (.smcl) output log
export_jasp_html(): Export a JASP (.jasp) file's own rendered output as standalone HTML
export_mplus_html(): Export an Mplus (.out) output file as standalone HTML
export_omv_html(): Export a jamovi (.omv) file's own rendered output as standalone HTML
export_spv_html(): Export an SPSS Viewer (.spv) file's tables and charts as standalone HTML
export_stata_smcl_html(): Export a Stata (.smcl) output log as standalone HTML
read_stat_tables(): Read the statistical result tables from a JASP, jamovi or notebook file
read_r_output(): Extract statistical results from captured R console output
extract_tests(): Extract the statistical tests a paper reports
match_reported_output(): Match reported statistical tests against the extracted analysis output
stat_output_json(): Serialise extracted result tables as a structured statistical-output document
stat_output_validate(): Validate a statistical-output document's native shape
stat_output_write(): Write extracted statistical output to a dedicated folder
stat_results_long(): Flatten extracted result tables into one queryable long data frame
stato_type_column(): Type a result-table column by its header, with a guaranteed fallback

Caches

metacheck_cache_info(): Show where metacheck's caches live and how big they are
osf_cache_clear(): Clear the session cache of OSF listings
repo_cache_dir(): Locate the downloaded-repository file cache
repo_cache_size(): Size of the downloaded-repository file cache
repo_cache_clear(): Delete the downloaded-repository file cache
repo_info_cache_clear(): Clear the on-disk repository-listing cache
zip_peek_cache_clear(): Clear the on-disk zip-peek cache

Internal functions

Functions for developers

cap_gate_count(): Build a "cannot process this many items" count-cap message
check_file_naming(): Check repository files against the FAIR file-naming conventions
check_orcid(): Check validity of ORCiD
credit_roles(): CRediT Roles
data_check_colname_collisions(): Flag column names that collide after sanitization
data_check_design_name(): Does a column name look like an experimental design variable?
data_check_is_behaverse() data_check_is_inquisit() data_check_is_jspsych() data_check_is_psychopy(): Detect trial-level behavioural-data source formats
data_check_is_qualtrics(): Detect whether a data frame is a Qualtrics survey export
data_check_outliers(): Flag Tukey (IQR) outliers in a numeric vector
data_check_pii_freetext(): Flag a free-text column that may contain incidental personal information
data_check_pii_geo(): Flag a column that holds geographic coordinates
data_check_pii_name(): Flag a column whose name suggests personal information
data_check_pii_values(): Flag values that match a personal-information pattern
data_check_whitespace(): Flag values with leading or trailing whitespace
data_col_concept(): Detect the substantive concept a column measures
data_col_stats(): Summary statistics for a numeric column
data_col_type(): Classify a single data column by rule
data_group_llm(): Assign a study group to each file with an LLM
data_is_manifest(): Detect a file manifest / table-of-contents masquerading as tabular data
data_promote_header_row(): Promote a mis-placed header row and drop leading metadata rows
data_read_head(): Read the head of a data file regardless of format
data_strip_qualtrics_header(): Strip Qualtrics secondary-header rows and re-type the columns
data_study_roster(): Study roster named in a paper's text
.aspredicted_info(): Retrieve and process info from AsPredicted by URL
.batch_query(): Batch query
.bibr_isalive(): Check bibr server status
.bibtype_convert(): Convert crossref/doi types to bibtex types
.code_blank_mplus_savedata(): Mplus's SAVEDATA command, blanked out
.code_blank_write_opens(): Calls that open a file for writing, blanked out
.code_env_pinned(): Whether the code's environment is written down, per language
.code_has_docstring(): Detect Python docstrings
.code_open_calls(): Calls that go on over the next lines
.code_session_packages(): The package versions a sessionInfo() or session_info() record lists
.code_version_pin_check(): Detect whether a paper pinned its R/package versions
.coerce_bib_authors(): Coerce bib authors column to list of data frames
.crossref_parse_item(): Parse a CrossRef item into a data frame row
.crossref_query_parse(): Parse crossref query items into a table
.data_doc_role(): Classify a documentation file's fine-grained role
.data_source_keys(): A name for each file that is unique within one data_check run
.dataone_host(): Identify which known DataONE member node a URL or DOI belongs to
.dataone_info(): Retrieve info from one DataONE object
.dataone_pid(): Get a DataONE persistent identifier (PID) from a URL or DOI
.dataverse_info(): Retrieve info from one Dataverse dataset
.dataverse_verify_downloads(): Check downloaded Dataverse files against the file system
.dataverse_zip_members(): Fetch selected files out of a .zip in a Dataverse dataset without downloading it
.detect_header_row(): Locate the true header row of a table read WITHOUT a header
.detect_live_data(): Detect Live Data Collection
.detect_no_participants(): Detect a Statement That No Participants Took Part
.dryad_doi(): Get Dryad DOI from URL
.dryad_info(): Retrieve info from one Dryad dataset
.dryad_verify_downloads(): Check downloaded Dryad files against the file system
.dryad_zip_members(): Fetch selected files out of a .zip in a Dryad dataset without downloading it
.figshare_id(): Get Figshare article ID from URL or DOI
.figshare_info(): Retrieve info from one Figshare article
.figshare_verify_downloads(): Check downloaded Figshare files against the file system
.figshare_zip_members(): Fetch selected files out of a .zip in a Figshare article without downloading it
.fsd_info(): Retrieve info from FSD by URL
.github_config(): GitHub Configuration
.gitlab_config(): GitLab Configuration
.grobid_isalive(): Check grobid server status
.grobid_to_bibr(): Convert grobid to Bibr format
.html_export_r_source(): Recover R source from a knitted R Markdown / Quarto HTML file
.html_sniff_kind(): Sniff whether an HTML file is rendered statistical/analysis output
.is_paper(): Detect a paper object
.is_paper_list(): Detect a list of paper objects
.is_r_package_file(): Identify files that belong to an R package's own source tree
.llm_model_list_groq(): Get Groq Models
.llm_ollama_native(): Call ollama native API with think support
.mendeley_id(): Get Mendeley Data dataset ID from URL or DOI
.mendeley_info(): Retrieve info from one Mendeley Data dataset
.mplus_export_syntax(): Recover a .out file's Mplus syntax as a sibling .inp file
.mplus_is_genuine_output(): Check whether a .out file is genuinely Mplus output
.mplus_output_tables(): Extract fixed-width result tables from one Mplus section's lines
.mplus_sections(): Split a .out file into named sections
.openalex_add_abstract(): Add abstract from inverted index
.osf_download_addons(): Download a node's files that live on a linked add-on
.osf_download_all(): Download every file in an OSF project, as one archive per node
.osf_download_logs(): Download an OSF project's activity log
.osf_download_wikis(): Download an OSF project's wikis
.osf_expand_user_ids(): Expand OSF user IDs into their project IDs
.osf_file_data(): Structure OSF File Data
.osf_headers(): OSF Headers
.osf_info(): Retrieve info from the OSF by ID
.osf_license(): Get an OSF project's licence
.osf_meta_dir: Name of the folder metadata is written to inside a project's download folder
.osf_meta_get(): Retrieve one OSF API listing as a parsed table
.osf_metadata_download(): Download an OSF Project's Metadata
.osf_node_data(): Structure OSF Node Data
.osf_node_metadata(): Collect an OSF project's structured metadata
.osf_node_record(): Get an OSF project's or registration's own record
.osf_parent_project(): Get OSF Parent Project
.osf_parse_response(): Parse an OSF API response into a data frame
.osf_pat_validate(): OSF PAT Validation
.osf_preprint_data(): Structure OSF Preprint Data
.osf_reg_data(): Structure OSF Registration Data
.osf_user_data(): Structure OSF User Data
.osf_user_nodes(): List the project IDs belonging to an OSF user
.osf_verify_downloads(): Check downloaded files against the file system
.osf_walk_nodes(): Walk an OSF project's component tree
.osf_write_readme(): Write a readable summary of what was archived
.osf_zenodo_metadata(): Get OSF project metadata for a Zenodo deposition
.paper_coerce(): Coerce paper object types
.paper_schema(): Get paper schema
.papers_release_assets(): Fetch all RDS release assets from a GitHub repo
.parse_author_string(): Parse a legacy author string into a data frame
.pb_say(): Write a line to a progress bar without leaving the old one behind
.process_full_text(): Process full text table
.psycharchives_info(): Retrieve info from PsychArchives by URL
.py_open_writes(): Whether a line of Python opens a file for writing
.rbox_api(): Send a Request to the ResearchBox API
.rbox_code(): Get the Peer-Review Passcode from a ResearchBox URL
.rbox_headers(): Headers Needed to Access ResearchBox
.rbox_id(): Get ResearchBox Box ID from URL
.rbox_info(): Retrieve info from ResearchBox by URL
.rbox_verify_downloads(): Check downloaded ResearchBox files against their checksums
.read_bibr(): Read bibr JSON file
.regcheck_poll(): Poll a RegCheck task until it completes
.regcheck_sanitize(): Make text safe for the RegCheck server
.regcheck_submit(): Submit a RegCheck comparison
.regcheck_submit_multipart(): Submit a RegCheck comparison via the multipart endpoint
.repro_classify_install_message(): Classify why a package installation failed
.repro_content_sniff(): Sniff whether a .R/.Rmd file that failed to parse is actually R
.repro_cran_archive_install(): Install a package's most recent CRAN Archive version
.repro_docker_default_image: The pre-built metacheck Docker image
.repro_docker_default_image_py: The Docker base image to use for a Python run
.repro_docker_elsewhere_lines(): The part of the install script for packages that are not on CRAN
.repro_docker_image_for(): The Docker base image to use for a run
.repro_find_export_pkg(): Find the one installed package (if any) that unambiguously exports a name
.repro_format_call_refs(): Find file paths built at runtime with sprintf()/paste()/paste0()/file.path()
.repro_is_jags_model(): Recognise a JAGS/BUGS model-definition file
.repro_keep_working_refs(): Rewrite only the references that cannot work as written
.repro_load_check(): Replace recorded versions that keep the installed packages from loading
.repro_load_check_lines(): The script that checks whether the installed packages load
.repro_missing_fn_pkgs(): Which library() calls to add for a missing function
.repro_package_plan(): The package layout's plan: every file in its own place
.repro_py_defined_vars(): Find the names each Python script defines at top level
.repro_py_imported(): Python files that other files of the run import
.repro_py_manifest_pins(): Parse a requirements.txt / pyproject.toml dependency block into per-package pins
.repro_recorded_plan(): The recorded version of each package the scripts load
.repro_redirect_writes(): Find a script's WRITE calls and redirect their targets into the sandbox
.repro_run_by_source(): Which scripts run inside another script, through source()
.repro_simple_string_vars(): Simple top-level string-literal variable assignments in a script
.researchdata4tu_id(): Get 4TU.ResearchData article ID from URL or DOI
.reshare_id(): Get ReShare eprint ID from URL or DOI
.reshare_info(): Retrieve info from one ReShare deposit
.reshare_verify_downloads(): Check downloaded ReShare files against the file system
.reshare_zip_members(): Fetch selected files out of a .zip in a ReShare deposit without downloading it
.smcl_command_chunks(): Split a rendered .smcl transcript into (command, output) chunks
.smcl_export_syntax(): Recover a .smcl file's Stata syntax as a sibling .do file
.smcl_render(): Render a full .smcl file's lines as plain text
.smcl_render_line(): Render one SMCL-marked-up line as plain text
.spv_decode_chart(): Decode one .spv chart (VizML chart.xml + its own raw case data)
.spv_decode_legacy_data(): Decode one legacy .spv raw case-data member
.spv_decode_legacy_table(): Decode one legacy .spv table (detail-xml structure + raw case data)
.spv_decode_light_table(): Decode one light-binary SPV table member into a tidy data frame
.spv_export_syntax(): Recover an .spv file's SPSS syntax as a sibling .sps file
.spv_stato_type_label(): Type a .spv result row by its statistic-name CELL VALUE, not a header
.stata_output_tables(): Extract fixed-width result tables from rendered .smcl output
.surf_isalive(): Check that metacheck's API on SURF Research Cloud can convert PDFs
.table_tests(): Build reported-test elements from a paper's table contents
.tabular_usable(): Is a read-in data frame a usable rectangular dataset?
.tar_peek(): List the files inside a remote plain .tar archive
.tei_authors(): Get authors from TEI type XML
.tei_bib(): Get bibliography from TEI type XML
.tei_table_contents(): Get a table's contents from a Grobid <table> node
.tei_text(): Get full text from TEI type XML
.tei_url(): Get URLs from text table
.tei_xrefs(): Get cross references from text table
.unnest_result(): Convert structured LLM result to a data frame
.xml2bib(): Parse XML bib format to bibtex
.xml_find1_text(): Find and return first text from XML by xpath
.xml_find_text(): Find and return text from XML by xpath
.xml_read_grobid(): Read in a grobid XML file
.zenodo_api(): Zenodo API base URL
.zenodo_auth(): Add Zenodo auth to a request
.zenodo_build_metadata(): Build the metadata Zenodo expects for one deposition
.zenodo_check_resp(): Report a Zenodo API error in a readable way
.zenodo_check_token(): Check a Zenodo token works before uploading anything
.zenodo_classify(): Classify files the way the check modules do
.zenodo_flat_names(): Work out the name each file will have on Zenodo
.zenodo_id(): Get zenodo ID from URL
.zenodo_info(): Retrieve info from Zenodo by ID
.zenodo_license_id(): Map an OSF license name to a Zenodo license identifier
.zenodo_meta_from_folder(): Read OSF metadata that was saved alongside a downloaded folder
.zenodo_regex_escape(): Escape a string for use in a regular expression
.zenodo_verify_downloads(): Check downloaded Zenodo files against the file system
.zenodo_zip_members(): Fetch selected files out of a .zip in a Zenodo record without downloading it
.zip_timeout_for_size(): Scale a zip download timeout up for a large expected transfer
download_repo_files(): Download the files listed by repo_check()
file_types: File Types
get_orcid(): Get ORCiD from Name
github_tree_files(): Get GitHub repository files via the Git Trees API
gitlab_tree_files(): Get GitLab project files, license, and default branch
logpath(): Get log path
match_column_labels(): Match data columns against codebook variable definitions (rules only)
message(): Less scary green messages
module_find(): Find a module by name or path
online(): Check if the host of a URL is online
`%empty_or%`: Default value for NULL or length-zero values
`%||%`: Default value for NULL
orcid_person(): Get Person Details for ORCiD
paper(): Create a paper object
paperlist(): Create a paperlist object
parse_codebook(): Parse a codebook file into variable definitions
parse_qsf(): Parse a Qualtrics survey-definition file (.qsf) into codebook variables
print(<metacheck_module_help>): Print Module Help Object
print(<metacheck_module_list>): Print Module List Object
print(<metacheck_module_output>): Print Module Output
print(<scivrs_paper>): Print Paper Object
print(<scivrs_paperlist>): Print PaperList Object
psychds_file_plan(): Build a file-to-target-path plan for a Psych-DS-style layout
regcheck_base_url(): RegCheck server URL for a client
regcheck_tidy(): Tidy a RegCheck result
rep_if(): Replace If
scales: Psychometric Scale Dictionary
`[`(<scivrs_paperlist>): Subset PaperList Object
tasks: Behavioural and Cognitive Task Dictionary
text_peek(): Peek at the first lines of a text file
txt_classify_content(): Classify a downloaded .txt file from its content
zip_decision(): Decide whether a remote ZIP is worth downloading for a data archive
zip_peek(): Peek at the contents of a remote ZIP file without downloading it