Package index • metacheck

App

metacheck_app(): Launch Shiny App

Reading in Papers

pdf2grobid(): Convert a PDF to Grobid XML

read() read_grobid() read_cermine() read_text(): Get paper from XML or text file

paper_validate(): Validate Papers

Demo Resources

demoxml(): Get demo XML file

demopdf(): Get demo PDF file

demodir(): Get demo directory of grobid XML files

psychsci: Psychologial Science Open Access Paper Set

Search Papers

search_text(): Search text

expand_text(): Expand text

concat_tables(): Concatenate tables

info_table(): Get paper information in a table

author_table(): Get author information in a table

Module Functions

module_list(): List modules

module_help(): Get Module Help

module_info(): Get module information

module_run(): Run a module

module_report(): Report from module output

module_template(): Create a Module from a Template

report(): Create a Report

Module Helpers

These functions help module writers make consistently formatted report text.

scroll_table(): Make Scroll Table

report_table(): Display a Table in a Report

collapse_section(): Make Collapsible Section

plural(): Pluralise

link(): Make an html link

format_ref(): Format Reference

pb(): Progress Bar

get_prev_outputs(): Get Previous Outputs

LLM Functions

llm(): Query an LLM

llm_max_calls(): Set the maximum number of calls to the LLM

llm_model(): Set the default LLM model

llm_model_list(): List Available LLM Models

llm_use(): Set or get metacheck LLM use

json_expand(): Expand a JSON column

References/Citations

crossref_doi(): CrossRef Info from DOI

crossref_query(): Look up Reference in CrossRef

doi_clean(): Clean DOIs

doi_valid_format(): Validate DOI format

doi_resolves(): Check whether a DOI resolves

FReD(): FORRT Replication Database

FReD_update(): Update FReD

FReD_date(): Get date FReD was updated

openalex_doi(): OpenAlex info from DOI

openalex_query(): Look up a reference in OpenAlex

pubpeer_comments(): Get Pubpeer Comments

retractionwatch() rw(): RetractionWatch data

rw_date(): Get date retractionwatch was updated

rw_update(): Update retractionwatch

OSF Functions

osf_api_check(): Check OSF API Server Status

osf_check_id(): Check OSF IDs

osf_delay(): Set the OSF delay

osf_file_download(): Download all OSF Project Files

osf_links(): Find OSF Links in Papers

osf_retrieve(): Retrieve info from the OSF by ID

osf_type(): Get OSF GUID Type

osf_get_all_pages(): Get All OSF API Query Pages

osf_api_calls(): Get/set the OSF API Call Count

osf_preprint_list(): Get A list of preprints from the OSF

GitHub Functions

github_config(): GitHub Configuration

github_links(): Find GitHub Links in Papers

github_repo(): Get Short GitHub Repo Name

github_info(): Get GitHub Repo Info

github_files(): Get File List from GitHub

github_readme(): Get README from GitHub

github_languages(): Get Languages from GitHub Repo

Archive Functions

aspredicted_links(): Find AsPredicted Links in Papers

aspredicted_retrieve(): Retrieve info from AsPredicted by URL

rbox_links(): Find ResearchBox Links in Papers

rbox_retrieve(): Retrieve info from ResearchBox by URL

Integrations

email(): Set or get email

filetype(): Get file Type from Extension

summarize_contents(): Summarize Directory Contents

causal_relations(): Extract causal relations from sentence(s) via a Hugging Face Space

check_orcid(): Check validity of ORCiD

get_orcid(): Get ORCiD from Name

orcid_person(): Get Person Details for ORCiD

credit_roles(): CRediT Roles

online(): Check if the host of a URL is online

Validation Functions

compare_tables(): Compare Tables for Validation

accuracy(): Accuracy

text_features(): Text features

distinctive_words(): Get Distinctive Words

Extras

verbose(): Set or get metacheck verbosity

extract_p_values(): Extract P-Values

extract_urls(): Extract URLs

stats(): Check Stats

emojis: Emojis